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THRa (Thyroid Hormone Receptor alpha)

Organism
Lates calcarifer (Asian sea bass)
GO term(s)
Molecular Function: GO: 0003677, GO:0003700, GO: 0003707
Cellular Component: GO: 0005634
Biological Process: GO: 0006355
Paralogs
Sequencing Methods
thraa: Transcriptome Shotgun Assembly

thrab: Not available
Citations
  • Kuznetsova,I.S., Thevasagayam,N.M., Sridatta,P.S., Komissarov,A.S., Saju,J.M., Ngoh,S.Y., Jiang,J., Shen,X. and Orban,L. (2014). Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Frontiers in Genetics, 5, 223.
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    Sequence >GAQL01039575.1 Lates calcarifer thraa
    AAGACCTTGTCAGCTAACAGCTGCATAGGTACATGCATATCTTTCTCTAATATTTGTATTTATTTAGAGTCATGCAAGTT
    TTTTAAGCACTGTTTTGGTCTCCACCATCATTATTACTTATTCTCTTGCAGAAAGTCTATTTTTAATATTAAAACAGATT
    TAGTTTAGTGTTTGGCTTGGAATGCTAAAACTTGCTTATTAGTTGTGAAGGTATTTTGTCATAAGCCAAAGTGATATTTA
    GACATTTAGACCGGATGAAAAGACAATACAAATCATCCTCTGGGGAAACTGATGCAAGTCTCATATCTCTTAATACATGA
    TGAAAGAAACCTCAAAAACTCAACCACACTCCCTATCCAGTATATTCACAGAAAGCATCATGATGTCCATACCATCTTTT
    AACTTTTCATTTATTATCAACACACCTATAATGTCTTGTATATATGAGACATAGTAATGCACAATATGGATGGGGACTTT
    ATATAAAGTGTTCCCACTGTAACTTTTAATGCTAGCAGAGAGGTAAATGGGTTAGTGAGCATGGTTTCTCATTAAACTGC
    TACCACCCACACAATAAATGAGGAAATACATTTTACAAGGTATGAGGTAAAAGTGTAGGGGTGTGTTTTGTGCACATACT
    CTGTGTGTGTTCGTGTGTGTGTTTGTGCGTAGTTGAGATAAAGAGAGGGAGAGAGAGAGAGGTCAGTACGTGAGGGAGGT
    AGGTTGACAAACACTCACAGGGCCTTGGCAGACTGAGGGATGGACTGCACGTGCAGATGGAAGTCACTCGCCATTGCAGT
    TAAAGAGATGCAAGAGAGGTGGGTGTGTGGAAGGGTGGGGGATGTCTGAGGAGCTAATGGTCAGGTCCCACAGATAAAAA
    AAACTACTCTTTTCTGAGGGAAGAGATGGGTGTGGAGGGAGTGGAGCCACAACCAAGCTCCTCAGTTTACATTAGTCGCA
    GGAACAGAGTACAGCTGTTTGTCCATACAGGTGCAAAAGGAGTTAATGGATGAGATTTGTGTTTGCATATAGATATACTG
    TGCGTACATGGCAGTGTGTTTGGAGTTTTAATCTGTGATTACCTATAAATGCTGTACTCTGTGTGTGTGTTTACCCCTCA
    GAATGACAAAAAGCAGAGGCAGATTGTCAGTGTGTTTCTCTCTGGTGATGTTGATGTGTGTGTTTGCTGGTGGCAGTTGG
    AGGGTCTTGTGGGTGTTTGATAAACAAAAGGGACAAAAAAACAAAGTTTATAGGTCACGTTCCCACTGAAAAAAAAAGAG
    TTATTTATTCTCCACTTGTCCTTCCCATGCACCTCCTCTGCCGCCAAGCCACCCCAAATTTCGTGCCTTCAGCATCCAGG
    GTTCTTTTAGGAGGTGCCGAAAAATCACACTTCCTGGTCCTCAAAGACCTCCAGGAAGAGTGGGGGAAAGAGTTCATTGG
    GACACTCCACCTTCATGTGGAGGAAGCGGCTGGCATGGCAAGCCCCTATCATGCGTAGGTCCGTCACCTTCATCAGCAAC
    TTGGGCCAGAAGTGGGGAATGTTGTGTTTGCGGTAGTTGATGTAGTGCTCGAACGCCAGCAAGTAGGCCTCCTGACACTG
    CTCGATCTTCTCCACACTGGTCAGTCCTGAACGGTCTGAGCTCATGAGCAGCACGGCCTGCATCAGCGCCACCTCTGAGT
    CATCCAGGTTAAACTGAGCCAGGCTCTTGCCCAAATCAAAGATGGCGTCCGACACCACGCCCAACCCGCCGTTCTTCAGC
    TGCTCACGTTTCACTGCCATCTCGCCGTTTAGTGTCAGAGTCTCGCTGTCTGGATCGTAACGAACAGCAGCGCGCAGCGA
    CATGATCTCCATGCAGCAGCCCTTCAGCAAGATGATCTGGTCTTCACAAGGCAGCTCTGAGAACATGGGCAATTTCTTGG
    CAAAGTCGACAACACGCGTTATGGCGGGGGTCATGATCTTGGTGAACTCACTGAAGGCTTCCAGGTCCACTTTGTCGCCA
    TCGGACGTGGGGACCAAAGGACCCTGGCCGATATCATCCGGCAGGAACTTGCGCTTCTGTTTCCAGCTGGAGCCCTGGGC
    ATTGGTGTGCCGATGAGCTTCTGTTGCCATCCTGATCAGCTCCCACTCTGCGGTGTTCGGCTCTGGCCTTATCTGCAGTG
    TCCGCACCATCTCCTCCCTCTTCCTTCTCTCTCGATTCTCCTCGATCAGACGCCGTTTGGCCACACGCTTCGACTCATCT
    AACACCAAGTCCATGGCCATGCCCACAGAGATGCACTTCTTAAAGCGGCACAGCTGGCACTGGTTGCGGGTGATCTTGTC
    AATGATGCAGCATCCTTCATATTTACAGGAGTAAGATGGATGGAGATTTTTCTGGATGGTCCTGCGGAAGAAACCCAAGA
    AGTAATGAAGTGATGGCAT
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    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

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    Data input by Elisavet Kaitetzidou
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