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Sox 9 (SRY (sex determining region Y)-box 9)

Organism
Oryzias latipes (Medaka)
Paralogs
Sox9a,
AY870394
Sequencing Methods
Sox9a: Sanger sequencing

Sox9b: Sanger sequencing
Citations
  • Klüver N, Kondo M, Herpin A, Mitani H, Schartl M. Divergent expression patterns of Sox9 duplicates in teleosts indicate a lineage specific subfunctionalization. Dev Genes Evol. 2005 Jun;215(6):297-305.
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    Sequence >AY870394.1 Oryzias latipes Sox9a
    ATGAATCTCCTCGACCCTTACCTGAAGATGACGGAGGAACAAGACAAATGTCTCTCTGACGCCCCGAGCCCGAGCATGTC
    CGAGGACTCCGCGGGATCCCCGGCCAGCCCGTCCGGGTCGGGCTCCGACACCGAGAACACCCGGCCGCGGGAAAACGGCC
    TGATGCGCGCGGACGGAGCTCTGAGCGACTTCAAGAAGGACGAAGACGACAAGTTTCCCGCGTGCATCCGGGAGGCGGTG
    TCTCAGGTGCTGAAGGGCTACGACTGGACGCTCGTGCCGATGCCGGTGCGCGTAAACGGATCTACAAAGAACAAGCCGCA
    CGTGAAGAGACCAATGAACGCCTTCATGGTGTGGGCGCAGGCGGCGCGCAGGAAGCTCGCGGATCAGTACCCCCACCTGC
    ACAACGCGGAGCTCAGCAAAACTCTGGGGAAGCTGTGGAGACTCCTCAATGAGGGGGAGAAGCGGCCGTTCGTGGAGGAG
    GCGGAGCGGCTCCGCGTGCAGCATAAGAAGGACCACCCGGACTACAAGTACCAGCCGCGACGGCGGAAGTCCGTGAAGAG
    CGGCGGGAGCGAGGCGGAGGACGGCGGGGAGCACATCTCCACCAACGCCATCTTCAAGGCTCTGCAGCAGGCGGACTCCC
    CCGCCTCCAGCATGGGGGAGGTGCACTCCCCCGCGGAGCACTCAGGCTCACAGGCACCCCCAACCCCTCCCACCACCCCA
    AAGACGGACTGCTCAGCAAAGATGGACCTAAAGCGTGAGGGGGGGCTGCGCCCACTGCCGGACGGCGCCCCCGGACGCCA
    GCTCAACATCGACTTCCGTGACGTGGACATCGGCGAGCTGAGCAGTGACGTCATCTCCCACATTGAGACGTTCGACGTCA
    ACGAGTTCGACCAGTACCTCCCCCCCAACGGGCACCCTGGCGCCGCCCCTGGGAGCACCGCCCCCGTCAGCTACAGCGGC
    AACTACAGCATCAGCGGCGCCCCGCCTCTGAGCCCGCAGGCAGGCGGGGGGCCGGCCTGGATGGCTAAGGCCCACAGTCA
    GCAGCAGCAGCACAGCCTGACCCCCCTGGGGACCAGCGGGGGTTCAGAGGCCGCCCTGCGCAGGACCCAGATTAAGACGG
    AGCAGCTGAGCCCGAGTCACTACAGCGAGCAGCAGGGCTCCCCCCAGAACGCCCCCTACAGCCCCTTCAACCTGCAGCAC
    TACAGCCCCCCCTCCTCCTCGTACCCGCCCATCTCCCGAGCGCAGCAGTATGATTACCCCGACCCCCAGGGAGGGGGCTT
    CTACAGCCCTGCAGGGGCGGGGCAGGGTTCTGGGCTGTACTCGACTTTCAGTTACATGAGCAGCCCCAGCCAGAGGCCCA
    TGTACACCCCCATCGCCGACAACGCGGGGGTGCCGTCCATCCCCCAGGGCAGCCCGCAGCACTGGGAGCAGGCGCCGGTC
    TACACGCAGCTGACCCGGCCCTGA
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    		or

    >AY870393 Oryzias latipes Sox9b
    ATGAATCTCCTCGATCCATACCTGAAGATGACAGAAGAACAGGAGAAGTGTCACTCCGACGCTCCCAGTCCCAGCATGTC
    TGAGGACTCCGCAGGTTCGCCTTGTCCGTCCGGCTCCGGTTCGGACACCGAAAACACCCGGCCGTCCGACAACCATCTCA
    TCAGGGGGCCGGACTACAAGAAAGAGGGTGAAGAAGAGAGGTTCCCCGTGTGCATTAGAGACGCGGTGTCCCAAGTGCTC
    AAGGGCTACGACTGGACTCTGGTGCCGATGCCAGTACGCGTCAACGGCTCGAGTAAAAGCAAACCTCACGTCAAAAGGCC
    CATGAATGCATTCATGGTCTGGGCTCAGGCAGCACGGAGGAAACTGGCCGACCAATACCCGCATTTGCACAACGCAGAGC
    TCAGCAAAACTCTTGGAAAACTTTGGAGGCTCCTTAATGAGGTGGAGAAGCGGCCGTTTGTGGAGGAGGCTGAGCGACTG
    AGGGTCCAGCACAAGAAGGATCATCCCGACTATAAATACCAGCCCAGGCGGAGAAAATCTGTCAAGAACGGTCAAAGCGA
    AGCGGAGGACAGCGAACCGACTCACATCTCTCCAAATGCGATCTTCAAAGCGCTGCAGCAGGCCGACTCTCCTGCGTCCA
    GCATGGGCGAGGCGCACTCTCCAGGAGAACATTCAGGTCAGTCACAGGGGCCACCAACACCCCCAACAACCCCCAAGACA
    GATCTTCCTTCCAGCAAAGCTGACCTGAAGCGCGAGGGCCGCCCAGTGCAAGAGGGCACCAGCCGCCAGCTCAACATAGA
    CTTTGGCACTGTGGACATCGGTGAGCTGAGCAGCGACGTCATCTCCAACATCGGCAGCTTCGACGTCGATGAGTTCGATC
    AGTACCTGCCCCCTCACAGCCACGCTGGGATGACCGGCACAGCCCAGACCAGCTACTCCAACAACTACGTTATCAACAGC
    TCTGCCGTTGGCCAGACAGCCAATGTTGGAGCCCATGCCTGGATGCCCAAACAGCAGCATTCTTTGGCCACCCTCGGTGG
    GGGTGGAGATCAAAGCCAACAGGGTCAACAGAGAACCACTCAGATCAAGACGGAGCAGCTGAGCCCCAGCCACTACAGCG
    AGCAGCAAAGCTCCCCACAGCACGTCAGCTACGGGTCCTTCAACCTGCAGCACTACAGCACCTCTTCTTACCCCTCCATC
    ACAAGAGCACAGTATGACTATTCAGACCACCAAAATAGTGCCAACTCTTACTACAGCCATGCAGCTGGTCAAGGCTCCAA
    CATGTACTCCACCTTCAGCTACATGAGCCCCAGCCAGAGGCCGATGTATACCCCCATCGCTGACAGTACTGGGGTGCCAT
    CTGTGCCACAGACCCACAGTCCACAGCACTGGGAGCAGCAGCCCATATACACCCAGCTGTCCAGACCGTGA
    Send to
    		or



    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by E.Sarropoulou
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