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GAPDH (Glyceraldehyde-3-phospate dehydrogenase)

Organism
Oryzias latipes (Medaka)
GO term(s)
Molecular Function: GO:0004365
Cellular Component: GO:0097452
Biological Process: n/a
Gene Structure


Phylogeny
Paralogs
Citations
  • Sarropoulou E., Nousdili D., Kotoulas G., Magoulas A. (2011). Functional divergences of GAPDH isoforms during early development in two perciform fish species. Marine Biotechnology, New York NY 13: 1115–1124. doi:10.1007/s10126-011-9375-6.
  • Cho YS, Lee SY, Kim KH, Nam YK. (2008). Differential modulations of two glyceraldehyde 3-phosphate dehydrogenase mRNAs in response to bacterial and viral challenges in a marine teleost Oplegnathus fasciatus (Perciformes). Fish Shellfish Immunol.25(5):472-6. doi: 10.1016/j.fsi.2008.07.007.
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    Sequence >XM_004077972.2Oryzias latipes glyceraldehyde-3-phosphate dehydrogenase 1
    ATGGTGAAAGTTGGTATCAATGGTTTTGGCCGTATCGGCCGTCTGGTGACCCGAGCTGCTTTCACCTCTAAAAAGGTGGA
    GATTGTGGCCATCAATGACCCGTTCATTGACCTGGACTACATGGTCTACATGTTCAAGTATGACTCCACCCACAACCGCT
    TCAAGGGTGAGGTCAAGGCTGAGGGAGGCAAACTAGTCATTGATGGACACCAGATCACCGTCTTCCATGAGAGGGACCCT
    ACTAACATTAAATGGGGTGAGGCCGGTGCCCAGTATGTTGTGGAGTCCACCGGTGTGTTTACTACCATTGAGAAGGCCTC
    TGCTCACTTGAAGGGCGGTGCCAAGAGAGTTATCATCTCTGCACCCAGCGCAGATGCCCCCATGTTCGTCATGGGAGTCA
    ACCACGAGAAGTACGACAACTCTCTCACGGTTGTCAGCAATGCGTCCTGCACAACAAACTGTCTGGCCCCCTTGGCCAAA
    GTCGTCCACGACAACTTCGGCATTGTTGAGGGCCTGATGAGCACAGTTCATGCCATCACTGCCACCCAGAAGACTGTGGA
    CGGACCCTCTGGTAAGCTGTGGAGGGACGGCCGTGGTGCCAGCCAGAACATCATCCCCGCCTCTACCGGAGCTGCCAAGG
    CTGTGGGAAAAGTCATCCCCGAGCTGAACGGCAAACTGACCGGCATGGCCTTCCGTGTGCCCACTCCCAATGTGTCGGTG
    GTTGATCTCACAGTCCGCCTGGAAAAACCAGCTAAATACGATGACATCAAAAAGGTAGTCAAGGCTGCATCTGAGGGACC
    CATGAAAGGCTTTCTTGGATACACAGAGGACCAGGTTGTCTCCACAGACTTCAATGGTGACACCCACTCCTCCATCTTTG
    ATGCTGGTGCCGGCATCGCCCTGAACGACCACTTTGTCAAGCTGGTCTCATGGTACGATAATGAGTTTGGCTACAGCAAC
    CGTGTCTGTGACCTCATGGCACACATGGCTGCCAAGGAGTAA
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    XM_004077781.2 Oryzias latipes Glyceraldehyde-3-phospate dehydrogenase-2
    ATGGCAGACCTCCATGTTGGAATCAATGGCTTTGGCCGCATTGGCCGCTTGGTCCTGAGGGCCTGCCTCCAGAAAGGCAT
    CAAAGTTGTGGCCATCAACGACCCCTTCATTGACCTGCAGTACATGGTCTATATGTTCAAATATGATTCCACTCATGGAC
    GTTACCATGGAGAAGTGTCCCATGAGGACGGCAAGCTGATAGTCGATGGGAACGCCATCTCTGTCTTCCAGTGCATGAAG
    CCAGCTGAGATCCCTTGGGGCAGCGCTGGAGCCAAATACGTAGTCGAGTCCACCGGAGTGTTTCTCAGTGTGGAAAAGGC
    CTCACTTCACATCCAAGGTGGGGCACAGCGTGTGGTCGTGTCTGCCCCCTCACCCGACGCTCCAATGTTTGTCATGGGAG
    TCAACGAAGACAAATACGACCCCTCTAGCATGACCATCGTCAGCAATGCCTCCTGCACCACTAACTGCCTGGCCCCCTTG
    GCTAAAGTCATTCACGATAACTTTGGCATTGAGGAGGCCCTCATGACTACAGTTCATGCTTACACAGCCACTCAGAAGAC
    AGTGGATGGTCCTAGCGCCAAGGCCTGGCGTGATGGACGTGGTGCCCACGCAAACATCATTCCAGCTTCCACTGGTGCTG
    CCAAAGCAGTGGGCAAAGTCATCCCTGCTCTCAACGGAAAGCTGACAGGTATGGCATTCAGGGTGCCAGTGGCTGATGTG
    TCTGTGGTGGATCTAACATGCCGCCTGTCCAAGGCCGCATCTTACGGCGAGATTAAGGAGGCTGTTAAGAAGGCTGCGCA
    TGGACCCATGAAGGGGATCCTGGGATACACCGAAGACCAGGTGGTGTCCTCTGATTTCATTGGTGACACTCACTCTTCCA
    TCTTTGATGCTGGAGCAGGCATCTCTCTTAACGACAACTTCGTCAAGCTCATTTCCTGGTATGACAATGAGTACGGCTAC
    AGCACCCGCGTGGCTGACCTGCTGCTGTACATGCATTCCAAGGAGTAG
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    		or



    Organism

    GO term(s)

    Gene Expression

    Gene Structure

    Possible Primers

    Phylogeny (Gene Tree)

    Synteny

    Genomic Map Locations

    Paralogs

    Sequencing Methods

    Citations

    Sequence

    Gene Domains

    Molecular Markers


    Data input by E.Sarropoulou
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